Ontological Discovery Environment

ODE Website and Tools

The Ontological Discovery Environment allows users to integrate phenotype centered gene sets across species, tissue and experimental platform. Sets can be stored, shared and compared privately, among user defined groups of investigators, and across all users.

Helpful Links: Introduction to ODE, Quick Start Guide

News and Notes

07-February-08: New Design and Layout
New design featuring re-organized site structure, drop-down menus, wider layout, and prettier pages.
06-July-07: First public release of the ODE.
Welcome.
15-Aug-06: First Version of Ontological Discovery Environment released
This is the initial release of the website for the ODE project. Festina lente.

Newest 5 GeneSets

GS641: CBD-WTLin_Sg-,SG-4
UCSD Cerebellum Development, Gene by age model - WT Linear, Sg-,Sg- quartic Cerebellum Developmental Gene Expression Staggerer Mutant, WT Linear, Sg-,Sg- quartic change across early development
GS10124: TSA v LowLG ttest0.01
This is data from Weaver PNAS 2006 paper. Rats from Low LG-ABN moms were treated with TSA or vehicle. Hippocampus total RNA was used. 274 genes were entered from t-test at p<0.01 comparing TSA-lowLG vs vehicle LowLG. This is not the anaylsis run from the paper.
GS10123: MP:0008973 decreased erythroid progenitor cell number
"reduced numbers of progenitors of the erythrocyte lineage" [CL:0000038, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] Data from MGI Phenotype database. Supporting Publications: 17584888, 18550708, 12368264, 16391009, 18552834, 12446700
GS10122: MP:0008477 decreased spleen red pulp amount
"reduction in the quantity of the parenchymatous tissue network of the spleen that consists of loose plates or cords (sinuses) infiltrated with red blood cells where most of the blood filtration occurs and degenerate erythrocytes are removed from the circulation" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] Data from MGI Phenotype database. Supporting Publications: 18339895, 18327259, 18275831, 8896458, 11672542
GS10121: MP:0004938 dilated vasculature
"stretched or widened aperture of the luminal space of the network of tubes that carries blood through the body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] Data from MGI Phenotype database. Supporting Publications: 17908936, 17646578, 12446700, 18436651, 17141160